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After DNA damage is repaired, how does a cell fully recover its functions?
Our team investigates the molecular choreography that restores transcriptional activity and nuclear/nucleolar architecture.

https://www.teammari.com/

Our Research

One of the most fascinating – and still relatively unexplored – aspects of DNA repair concerns how cells are able to fully restore their functions once DNA lesions have been removed and genomic integrity has been re-established.
DNA damage not only interferes with transcription, replication, and cell cycle progression, but can also disrupt nuclear architecture, altering chromatin domain positioning and nucleolar organization.
Our team focuses on the molecular mechanisms that allow cells to regain normal transcriptional activity after DNA repair. In particular, we study the reorganization of nucleolar structure, an essential yet poorly understood process.

Credit: Lise-Marie DONNIO

Research Project

The nucleolus is a membrane-less nuclear compartment with a highly ordered internal organization, tightly linked to its main role in ribosome biogenesis. This includes the transcription of ribosomal DNA (rDNA) by RNA polymerase I (RNAP1) and the early maturation of ribosomal RNA.
This sophisticated organization can be severely disrupted by genotoxic agents or by general cellular stress. In recent years, our work has shown that following genotoxic stress such as ultraviolet (UV) irradiation, RNA polymerase I and ribosomal DNA are relocated to the nucleolar periphery. Remarkably, nucleolar architecture is only restored once all rDNA lesions – in both active and inactive regions – have been repaired.
Complete restoration of the nucleolus therefore depends not only on efficient DNA repair systems, but also on the action of key proteins. Among these, the SMN protein (Survival of Motor Neuron), which is defective in patients with spinal muscular atrophy (SMA), plays a central role. We have demonstrated that in the absence of SMN, RNA polymerase I remains trapped at the nucleolar periphery even after DNA damage repair is completed. Strikingly, SMN translocates from Cajal bodies (CBs) to the nucleolus immediately after repair, but before nucleolar structure is fully re-established.

Our Objectives

We have different project research axis :

How SMN Protein Moves and Maintains Nucleolar Health

How Cajal Bodies and the Nucleolus Respond to DNA Damage

Protecting SMN-Deficient Cells from Oxidative Stress

Studying SMN Function in Post-Mitotic Cells

Publications

2024
Donnio LM, Giglia-Mari G, Keep calm and reboot – how cells restart transcription after DNA damage and DNA repair, FEBS Lett 2025 Jan; 599(2): 275-294.
2024
Belotti E, Lacoste N, Iftikhar A, Simonet T, Papin C, Osseni A, Streichenberger N, Mari PO, Girard E..., H2A.Z is involved in premature aging and DSB repair initiation in muscle fibers., Nucleic Acids Res 2024 Apr; 52(6): 3031-3049.
2024
Sutcu HH, Rassinoux P, Donnio LM, Neuillet D, Vianna F, Gabillot O, Mari PO, Baldeyron C, Giglia-Mar..., Decline of DNA damage response along with myogenic differentiation., Life Sci Alliance 2024 Feb; 7(2): .
2023
Sandoz J, Cigrang M, Zachayus A, Catez P, Donnio LM, Elly C, Nieminuszczy J, Berico P, Braun C, Alek..., Active mRNA degradation by EXD2 nuclease elicits recovery of transcription after genotoxic stress, Nat Commun 2023 Jan; 14(1): 341.
2023
Musawi S, Donnio LM, Zhao Z, Magnani C, Rassinoux P, Binda O, Huang J, Jacquier A, Coudert L, Lomont..., Nucleolar reorganization after cellular stress is orchestrated by SMN shuttling between nuclear compartments, Nat Commun 2023 Nov; 14(1): 7384.
2022
Elena Cerutti, Laurianne Daniel, Lise-Marie Donnio, Damien Neuillet, Charlene Magnani, Pierre-Olivie..., β-Actin and Nuclear Myosin I are responsible for nucleolar reorganization during DNA Repair, .
2022
Shaqraa Musawi, Lise-Marie Donnio, Charlène Magnani, Olivier Binda, Jocelyn Côté, Patrick Lomonte..., Nucleolar Reorganization After Cellular Stress is Orchestrated by SMN Shuttling Between Nuclear Compartments, .
2022
Donnio LM, Cerutti E, Magnani C, Neuillet D, Mari PO, Giglia-Mari G, XAB2 dynamics during DNA damage-dependent transcription inhibition, Elife 2022 Jul; 11(): .
2022
Taupelet F, Donnio LM, Magnani C, Mari PO, Giglia-Mari G, A stable XPG protein is required for proper ribosome biogenesis: Insights on the phenotype of combinate Xeroderma Pigmentosum/Cockayne Syndrome patients, PLoS One 2022 ; 17(7): e0271246.
2019
Donnio LM, Miquel C, Vermeulen W, Giglia-Mari G, Mari PO, Cell-type specific concentration regulation of the basal transcription factor TFIIH in XPBy/y mice model, Cancer Cell Int 2019 ; 19(): 237.
2019
Alain Sarasin, Giuseppina Giglia-Mari, p53 gene mutations in human skin cancers., Experimental Dermatology.
2019
Donnio LM, Lagarou A, Sueur G, Mari PO, Giglia-Mari G, CSB-Dependent Cyclin-Dependent Kinase 9 Degradation and RNA Polymerase II Phosphorylation during Transcription-Coupled Repair., Mol Cell Biol 2019 Mar; 39(6): .
2018
Daniel L, Cerutti E, Donnio LM, Nonnekens J, Carrat C, Zahova S, Mari PO, Giglia-Mari G, Mechanistic insights in transcription-coupled nucleotide excision repair of ribosomal DNA., Proc Natl Acad Sci U S A 2018 Jul; 115(29): E6770-E6779.
2013
Mourgues S, Gautier V, Lagarou A, Bordier C, Mourcet A, Slingerland J, Kaddoum L, Coin F, Vermeulen ..., ELL, a novel TFIIH partner, is involved in transcription restart after DNA repair., Proc Natl Acad Sci U S A 2013 Oct; 110(44): 17927-32.
2013
Julie Nonnekens, Jorge Perez-Fernandez, Arjan F Theil, Olivier Gadal, Chrystelle Bonnart, Giuseppina..., Mutations in TFIIH causing trichothiodystrophy are responsible for defects in ribosomal RNA production and processing, Human Molecular Genetics.
2013
Marion Maisonobe, Giuseppina Giglia-Mari, Denis Eckert, DNA Repair: A changing geography? (1964–2008), DNA Repair.
2013
Lara Kaddoum, Nicolas Panayotis, Honoré Mazarguil, Giuseppina Giglia-Mari, Jean Christophe Roux, Et..., Isoform-specific anti-MeCP2 antibodies confirm that expression of the e1 isoform strongly predominates in the brain, F1000Research.
2012
Godon C, Mourgues S, Nonnekens J, Mourcet A, Coin F, Vermeulen W, Mari PO, Giglia-Mari G, Generation of DNA single-strand displacement by compromised nucleotide excision repair., EMBO J 2012 Aug; 31(17): 3550-63.
2012
Frédéric Coin, Bernardo Reina-San-Martin, Giuseppina Giglia-Mari, Mark Berneburg, DNA in 3R: Repair, Replication, and Recombination, Biochemistry and molecular biology international.
2011
G. Giglia-Mari, A. Zotter, W. Vermeulen, DNA Damage Response, Cold Spring Harbor Perspectives in Biology.
2010
Overmeer RM, Gourdin AM, Giglia-Mari A, Kool H, Houtsmuller AB, Siegal G, Fousteri MI, Mullenders LH..., Replication factor C recruits DNA polymerase delta to sites of nucleotide excision repair but is not required for PCNA recruitment., Mol Cell Biol 2010 Oct; 30(20): 4828-39.
2009
Giglia-Mari G, Theil AF, Mari PO, Mourgues S, Nonnekens J, Andrieux LO, de Wit J, Miquel C, Wijgers ..., Differentiation driven changes in the dynamic organization of Basal transcription initiation., PLoS Biol 2009 Oct; 7(10): e1000220.
2008
Simone Sabbioneda, Audrey Gourdin, Catherine Green, Angelika Zotter, Giuseppina Giglia-Mari, Adriaan..., Effect of Proliferating Cell Nuclear Antigen Ubiquitination and Chromatin Structure on the Dynamic Properties of the Y-family DNA Polymerases, Molecular Biology of the Cell.
2003
Giuseppina Giglia-Mari, Alain Sarasin, TP53 mutations in human skin cancers, Human Mutation.
2001
Alain Spatz, Giuseppina Giglia-Mari, Simone Benhamou, Alain Sarasin, Association between DNA repair-deficiency and high level of p53 mutations in melanoma of Xeroderma pigmentosum, Cancer Research.